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The genome of the vervet (Chlorocebus aethiops sabaeus)

Overview of attention for article published in Genome Research, September 2015
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About this Attention Score

  • In the top 5% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (94th percentile)
  • Good Attention Score compared to outputs of the same age and source (76th percentile)

Mentioned by

news
2 news outlets
twitter
20 tweeters
facebook
2 Facebook pages
wikipedia
1 Wikipedia page

Citations

dimensions_citation
26 Dimensions

Readers on

mendeley
32 Mendeley
citeulike
2 CiteULike
Title
The genome of the vervet (Chlorocebus aethiops sabaeus)
Published in
Genome Research, September 2015
DOI 10.1101/gr.192922.115
Pubmed ID
Authors

Wesley C Warren, Anna J Jasinska, Raquel Garcia-perez, Hannes Svardal, Chad Tomlinson, Mariano Rocchi, Nicoletta Archidiacono, Oronzo Capozzi, Patrick Minx, Michael J Montague, Kim Kyung, LaDeana W Hillier, Milinn Kremitzki, Tina Graves, Colby Chiang, Jennifer Hughes, Nam Tran, Yu Wang, Vasily Ramensky, Oi-wa Choi, Yoon J Jung, Christopher A Schmitt, Nikoleta Juretic, Jessica Wasserscheid, Trudy R Turner, Roger W Wiseman, Jennifer J Tuscher, Julie A Karl, Jöern E Schmitz, Roland Zahn, David H O'Connor, Eugene Redmond, Alex Nisbett, Béatrice Jacquelin, Michaela C Müller-Trutwin, Jason M Brenchley, Michel Dione, Martin Antonio, Gary P Schroth, Jay R Kaplan, Matthew J Jorgensen, Gregg WC Thomas, Matthew W Hahn, Brian Raney, Bronwen Aken, Juergen Schmitz, Gennady Churakov, Angela Noll, Roscoe Stanyon, David Webb, Francoise Thibaud-Nissen, Magnus Nordborg, Tomas Marques-Bonet, Ken Dewar, George M Weinstock, Richard K Wilson, Nelson B Freimer, Warren, Wesley C, Jasinska, Anna J, Garcia-Perez, Raquel, Svardal, Hannes, Tomlinson, Chad, Rocchi, Mariano, Archidiacono, Nicoletta, Capozzi, Oronzo, Minx, Patrick, Montague, Michael J, Kyung, Kim, Hillier, LaDeana W, Kremitzki, Milinn, Graves, Tina, Chiang, Colby, Hughes, Jennifer, Tran, Nam, Wang, Yu, Ramensky, Vasily, Choi, Oi-Wa, Jung, Yoon J, Schmitt, Christopher A, Juretic, Nikoleta, Wasserscheid, Jessica, Turner, Trudy R, Wiseman, Roger W, Tuscher, Jennifer J, Karl, Julie A, Schmitz, Jöern E, Zahn, Roland, O'Connor, David H, Redmond, Eugene, Nisbett, Alex, Jacquelin, Béatrice, Müller-Trutwin, Michaela C, Brenchley, Jason M, Dione, Michel, Antonio, Martin, Schroth, Gary P, Kaplan, Jay R, Jorgensen, Matthew J, Thomas, Gregg Wc, Hahn, Matthew W, Raney, Brian, Aken, Bronwen, Schmitz, Juergen, Churakov, Gennady, Noll, Angela, Stanyon, Roscoe, Webb, David, Thibaud-Nissen, Francoise, Nordborg, Magnus, Marques-Bonet, Tomas, Dewar, Ken, Weinstock, George M, Wilson, Richard K, Freimer, Nelson B, Wesley C. Warren, Anna J. Jasinska, Raquel García-Pérez, Michael J. Montague, LaDeana W. Hillier, Yu Huang, Yoon J. Jung, Christopher A. Schmitt, Trudy R. Turner, Roger W. Wiseman, Jennifer J. Tuscher, Julie A. Karl, Jörn E. Schmitz, David H. O'Connor, Michaela C. Müller-Trutwin, Jason M. Brenchley, Gary P. Schroth, Jay R. Kaplan, Matthew J. Jorgensen, Gregg W.C. Thomas, Matthew W. Hahn, Brian J. Raney, Rishi Nag, George M. Weinstock, Richard K. Wilson, Nelson B. Freimer

Abstract

We describe a genome reference of the African green monkey or vervet (Chlorocebus aethiops). This member of the Old World monkey (OWM) superfamily is uniquely valuable for genetic investigations of simian immunodeficiency virus (SIV), of which it is the most abundant natural host species, and of a wide range of health-related phenotypes assessed in Caribbean vervets (C. a. sabaeus), whose numbers have expanded dramatically since Europeans introduced small numbers of their ancestors from West Africa during the colonial era. We use the reference to characterize the genomic relationship between vervets and other primates, the intrageneric phylogeny of vervet subspecies, and genome-wide structural variations of a pedigreed C. a. sabaeus population. Through comparative analyses with human and rhesus macaque, we characterize at high resolution the unique chromosomal fission events that differentiate the vervets and their close relatives from most other catarrhine primates, in whom karyotype is highly conserved. We also provide a summary of transposable elements and contrast these with the rhesus macaque and human. Analysis of sequenced genomes representing each of the main vervet subspecies supports previously hypothesized relationships between these populations, which range across most of sub-Saharan Africa, while uncovering high levels of genetic diversity within each. Sequence-based analyses of major histocompatibility complex (MHC) polymorphisms reveal extremely low diversity in Caribbean C. a. sabaeus vervets, as compared to vervets from putatively ancestral West African regions. In the C. a. sabaeus research population we discover the first structural variations that are in some cases predicted to have a deleterious effect; future studies will determine the phenotypic impact of these variations.

Twitter Demographics

The data shown below were collected from the profiles of 20 tweeters who shared this research output. Click here to find out more about how the information was compiled.

Mendeley readers

The data shown below were compiled from readership statistics for 32 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 3%
Austria 1 3%
Unknown 30 94%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 9 28%
Student > Bachelor 4 13%
Researcher 4 13%
Professor 3 9%
Student > Doctoral Student 3 9%
Other 9 28%
Readers by discipline Count As %
Agricultural and Biological Sciences 17 53%
Biochemistry, Genetics and Molecular Biology 8 25%
Immunology and Microbiology 2 6%
Medicine and Dentistry 2 6%
Engineering 2 6%
Other 1 3%

Attention Score in Context

This research output has an Altmetric Attention Score of 32. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 16 March 2018.
All research outputs
#371,890
of 11,364,832 outputs
Outputs from Genome Research
#267
of 3,237 outputs
Outputs of similar age
#13,277
of 240,956 outputs
Outputs of similar age from Genome Research
#14
of 59 outputs
Altmetric has tracked 11,364,832 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 96th percentile: it's in the top 5% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 3,237 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 13.4. This one has done particularly well, scoring higher than 91% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 240,956 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 94% of its contemporaries.
We're also able to compare this research output to 59 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 76% of its contemporaries.